How Does Biweekly Payroll Work? Pros, Cons & Compliance Tips

Learn how biweekly payroll works, get biweekly payroll explained, and explore payroll schedules to streamline your HR and compliance in 2025.

Brett Ungashick
OutSail HRIS Advisor
April 29, 2025

How Does Biweekly Payroll Work? Pros, Cons & Compliance Tips

Payroll isn’t just a back-office task—it’s the foundation of employee trust and financial stability. For HR professionals and business owners alike, choosing the right payroll schedule is a critical decision. One of the most popular options in the U.S. is biweekly payroll, and for good reason.

But how does biweekly payroll work, exactly? What makes it different from other payroll schedules? And how can your organization stay compliant while streamlining the process?

This comprehensive guide breaks it all down: the mechanics of biweekly payroll, its advantages and drawbacks, compliance tips, and how an HRIS can help you manage it all with ease.

Biweekly Payroll Explained

Let’s start with the basics. Biweekly payroll means that employees are paid once every two weeks, typically on the same day of the week, such as every other Friday. This results in 26 pay periods in a calendar year (or 27 in some years due to calendar shifts).

Quick Overview:

Why It Matters:

Unlike semi-monthly payroll, which follows fixed calendar dates (e.g., 15th and 30th), biweekly payroll aligns with weekdays, providing consistent and predictable schedules for both employees and payroll administrators.

This structure is particularly advantageous for calculating overtime, especially in industries with hourly workers or fluctuating shifts.

How Does Biweekly Payroll Work?

Here’s how the biweekly process functions from start to finish:

  1. Set the Payroll Calendar: You choose a start date and pay day (e.g., every other Friday). Each pay cycle typically covers 14 days.
  2. Track Hours Worked: Hourly employees log time for each two-week cycle. Salaried employees receive a consistent gross pay amount per period.
  3. Calculate Deductions: Taxes, insurance, retirement contributions, and other withholdings are deducted per cycle.
  4. Process Payroll: Pay is calculated, reviewed, and then distributed—usually via direct deposit or physical check.
  5. Report & File Taxes: As with other payroll schedules, employers must submit federal, state, and local tax payments regularly based on pay frequency.

Example: Biweekly Payroll Calendar (2025 Sample)

Note: May in this example includes three pay periods, which can affect benefit deductions and budgeting if not planned for.

Pros of Biweekly Payroll

Biweekly payroll has become the go-to standard for many U.S. companies. Here’s why:

1. Ideal for Hourly Employees

Biweekly schedules line up neatly with a standard 40-hour workweek. This makes it easy to calculate regular pay, overtime, and shift differentials.

2. Improved Cash Flow Management

With only 26 payroll runs per year (compared to 52 for weekly schedules), biweekly payroll reduces the administrative burden and costs associated with frequent processing.

3. Predictability for Employees

Getting paid every other Friday allows employees to better plan around rent, bills, and savings goals. This can reduce financial stress and improve satisfaction.

4. More pleasing Overtime Tracking

Because overtime is calculated weekly under FLSA rules, biweekly payroll supports consistent and compliant tracking across two-week spans.

5. Common Industry Practice

It’s widely adopted across industries, especially in retail, hospitality, healthcare, and manufacturing, making employee expectations easier to manage.

Cons of Biweekly Payroll

Despite its popularity, biweekly payroll does come with a few drawbacks, especially if not managed properly:

1. Uneven Monthly Budgeting

Because some months have three pay periods, employer budgeting can become inconsistent. Companies must account for the “extra” payroll cycle when forecasting.

2. Benefits Deduction Challenges

Most benefit premiums (health insurance, retirement, etc.) are structured monthly. With biweekly payroll, employers need to either split premiums over 26 paychecks or skip deductions in months with three pay periods.

3. Complex for Semi-Monthly Employees

For teams that include both salaried and hourly staff, managing different payroll schedules (biweekly vs. semi-monthly) can lead to confusion or errors.

4. Holiday Overlap

If a pay date falls on a federal holiday, adjustments need to be made—usually processing a day earlier, which requires proactive scheduling and communication.

Compliance Considerations for Biweekly Payroll

Employers using biweekly payroll must remain compliant with federal and state labor laws. Here's what to watch out for:

1. FLSA Overtime Rules

Under the Fair Labor Standards Act (FLSA), non-exempt employees must be paid 1.5x the hourly rate for hours worked over 40 in a workweek. A biweekly schedule should never result in averaging hours across weeks to avoid overtime.

2. State-Specific Pay Frequency Laws

Some states mandate minimum pay frequencies, especially for certain job types:

  • California: Manual laborers must be paid at least twice per month.
  • New York: Manual workers are required to be paid weekly.
  • Illinois: Must pay employees semi-monthly at a minimum.

Employers must ensure their payroll schedule complies with all relevant state laws based on location and employee classification.

3. Tax Filing Obligations

Your tax deposit schedule may be affected by how often you pay employees. Biweekly payroll generally leads to more frequent tax payments (semiweekly or monthly deposits, depending on your tax liability).

Tip: Use your HRIS platform to track pay frequencies, maintain accurate records, and receive compliance alerts.

Examples of HR-Centric Payroll Platforms (Mid-Market)

For mid-market companies looking to manage biweekly payroll efficiently while supporting broader HR functions like onboarding, benefits administration, compliance, and performance management, choosing the right payroll platform is crucial.

Here are some leading HR-centric payroll systems designed specifically for growing businesses:

1. Gusto

Gusto offers a user-friendly payroll and HR platform tailored for small to mid-sized businesses. It simplifies biweekly payroll management with automated tax filings, direct deposits, benefits integration, and employee self-service portals. Gusto also provides compliance support, making it ideal for companies scaling rapidly.

2. Paychex

Paychex is a trusted name in payroll and HR services, offering scalable solutions for businesses of all sizes. Their mid-market products, like Paychex Flex®, combine powerful payroll automation with benefits management, employee onboarding, time tracking, and retirement planning—all within a single platform.

3. iSolved

iSolved is a robust HCM (Human Capital Management) platform known for its strength in payroll, HR, benefits, and workforce management. It is particularly strong for companies needing advanced tracking for biweekly overtime, leave accruals, and ACA compliance.

4. Rippling

Rippling seamlessly combines payroll, HR, IT, and employee management into one modern system. It’s especially useful for companies that need fast biweekly processing, benefits automation, compliance management, and the ability to onboard remote teams efficiently.

5. Paylocity

Paylocity provides a cloud-based HR and payroll software suite that’s particularly strong in automating biweekly payroll cycles. It also offers tools for employee engagement, performance management, compliance reporting, and advanced workforce analytics, making it ideal for growing HR teams.

6. Paycom

Paycom is an end-to-end HCM platform where employees manage their own HR data through self-service functionality. It automates biweekly payroll processing, tax filings, and benefit deductions while integrating with modules for talent acquisition, onboarding, and learning management.

7. Paycor

Designed with HR leaders in mind, Paycor offers intuitive payroll solutions, HRIS features, compliance support, and workforce analytics. Its biweekly payroll processing is tightly integrated with robust talent management tools, helping mid-market businesses streamline their entire HR operation from one platform.

Sample Biweekly Payroll vs Semi-Monthly Comparison

When Is Biweekly Payroll the Right Choice?

Choose biweekly payroll if:

  • Your workforce includes a large number of hourly or shift-based employees
  • You need to track overtime weekly under FLSA rules
  • You want predictable paydays on Fridays
  • Your HRIS system can handle benefit deduction complexities

Avoid biweekly payroll if your team is primarily salaried or your benefits and deductions are tightly structured around monthly accounting.

Final Thoughts: Biweekly Payroll Is Powerful—If Managed Right

Understanding how biweekly payroll works gives HR teams the clarity they need to choose the best payroll schedule for their workforce. While it offers flexibility and predictability, especially for hourly staff, it also comes with planning challenges that need to be addressed proactively.

By choosing a modern, HR-focused payroll platform like Gusto, Paychex, iSolved, Rippling, Paylocity, Paycom, or Paycor, businesses can automate complex processes, stay compliant, and create a seamless experience for both HR teams and employees.

Get Expert Help: Choose the Right Payroll Partner

Still deciding which HR and Payroll platform is the right fit for your mid-market company?

Outsail provides free, unbiased consultations to help growing businesses navigate their options. Whether you’re managing biweekly payroll, need better benefits integration, or want to strengthen compliance workflows, we’ll match you with the best vendor for your specific needs.

Schedule your free Outsail consultation today and simplify your HR and payroll operations in 2025 and beyond!

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Meet the Author

Brett Ungashick
OutSail HRIS Advisor
Brett Ungashick, the friendly face behind OutSail, started his career at LinkedIn, selling HR software. This experience sparked an idea, leading him to create OutSail in 2018. Based in Denver, OutSail simplifies the HR software selection process, and Brett's hands-on approach has already helped over 1,000 companies, including SalesLoft, Hudl and DoorDash. He's a go-to guy for all things HR Tech, supporting companies in every industry and across 20+ countries. When he's not demystifying HR tech, you'll find Brett enjoying a round of golf or skiing down Colorado's slopes, always happy to chat about work or play.

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